Muslim Brotherhood candidate Mohammed Mursi and Hosni Mubarak-era prime minister Ahmed Shafiq are sure to face each other in the June 16-17 run-off presidential election in Egypt, according to tallies by the Islamist group. “There will be a run-off between Mohammed Mursi and Ahmed Shafiq,” after 90 percent of the votes were counted nationwide, the Islamist group said on its website. Representatives of the 12 candidates contesting the election witnessed the overnight vote count across the country and were present when the individual results were announced at each polling station. Judges overseeing the count then hand the official results of each station to the candidates' representatives. The Islamist group compiled the results from around the country before announcing them. Earlier, when ballots from half the polling stations had been counted, the Muslim Brotherhood put Mursi ahead with 30.8 percent, followed by Shafiq with 22.3 percent. A spokesman from Shafiq's campaign, Karim Salem, said they were “confident that General Shafiq would be in the second round” but they were still waiting for official results. “It's the candidate who was the clearest and the most honest,” Salem said denying fears that Shafiq would represent a retreat from the goals of the uprising. “No (the Mubarak) era is finished, politics have changed. Egypt is entering democracy,” Salem said. However, a senior political analyst claims that Shafiq has been a close family friend of Mubarak and the two regularly played squash. The analyst said Shafiq gaining a high-profile now may not be liked by many in Egypt. But he predicted that a majority of liberals and Coptic supporters of former Arab League chief Amr Moussa would vote for Shafiq in the run-off. Between now and the run-off on June 16-17, there is likely to be intense horse-trading between the two front-runners to win over the supporters of the losing candidates, some of whom share similar beliefs with them. In Cairo, voters were thrilled by the free, contested election, whose results were not predetermined, but conceded that many challenges lay ahead. “It's our first year of democracy, like a baby that is still learning to crawl,” said Mustafa Abdo, a bank employee. The election saw 50 million eligible voters given the chance to choose among 12 candidates pitting Islamists who pledged to uphold the uprising's ideals against former regime figures who touted their experience. US Secretary of State Hillary Clinton congratulated Egypt on its “historic” presidential election, and said Washington was ready to work with a new government in Cairo. “We will continue to stand with the Egyptian people as they work to seize the promise of last year's uprising and build a democracy that reflects their values and traditions, respects universal human rights, and meets their aspirations for dignity and a better life,” Clinton said. Electoral commission officials said turnout was around 50 percent over the two days of voting on Wednesday and Thursday, with some voters queuing for hours to cast their ballot. In schools and other institutions around the country, representatives from Egypt's electoral commission carefully sorted the ballots, each printed with the name, photograph and electoral symbol of the candidates, into neat piles. Contenders included Amr Moussa, who touted his experience but was hammered for his ties to the old regime. Shafiq was also shunned by some for his time in Mubarak's government, but others praised his law-and-order platform in a country where many crave stability. The powerful Muslim Brotherhood's candidate, Mursi, faced competition from Abdel Moneim Aboul Fotouh, a former member of the Islamist movement who portrayed himself as a consensus choice. Also in the running was Hamdeen Sabahi, a Nasserist who was initially considered a fringe candidate but gained surprise momentum late in the campaign. During his campaign, Mursi offered a fiery stump speech, pledging a presidency that would be based on Islam but would not be a theocracy.